rs3149086 SNP Detail

Summary

• ID
  rs3149086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118270802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGA TGACATGGTG AGATGTTGTC
  Y
  CCAACTAAAG AGCTCAGTGA GGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45218578	mCV23160552	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147300464	ENSMUSSNP894701	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320469562	CHEV_2_118266057	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149086					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118270802 () rs orientation: forward

Symbol	Name	Function Class
D2Mit276	DNA segment, Chr 2, Massachusetts Institute of Technology 276	1746 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	within coordinates
Rr45942	regulatory region 45942	1199 bp proximal