rs31491116 SNP Detail

Summary

• ID
  rs31491116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128771614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGGGTA GTCCCAGAGG
  GGCCTGACTG TCTGGCCTCA TTGCGCTCCA GCAGGGGGCA TTCTGCTGAC TGGGGGCACA
  GAGAAGCTGC CACCTTGTTT GGTCTCTCTC TCCTGTAGCC TCTTGAGCAC TGATAGGAAG
  ACTCATTTGT TTTCATTCTA ACTTAGGTAA GATTTTGAGT TCTATCTTTC CTACTTTGCT
  Y
  TGTATTTGCC ACCTCACTTA TTCCTATCAA CTGCAAAATG GAAGCAAACA ATACCACGAT
  CCCGTCGGAT CATTCAATAG CACAAGGCCT GTAGTGAGTG CTGTGAAAGT GTTCGCTGTC
  CTGGAGCCCT GGTGTTGGGA TTCACAGAGC CTGAGAACAG CTTCACAGCA TCTTGGATCC
  AGAGGCTTGG CTGGAGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47058436	NES11260427	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T	C		T
ss323536824	CHEV_10_128372801	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31491116					SNP	T	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058436	NES11260427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128771614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	1481 bp distal
Gm67752	predicted gene, 67752	60 bp downstream
Itga7	integrin alpha 7	within coordinates
Rr441374	regulatory region 441374	1915 bp distal
Rr441375	regulatory region 441375	within coordinates
Rr441376	regulatory region 441376	136 bp distal
Tssr96480	transcription start site region 96480	1982 bp downstream
Tssr96481	transcription start site region 96481	1964 bp downstream
Tssr96482	transcription start site region 96482	1917 bp downstream