rs31491119 SNP Detail

Summary

• ID
  rs31491119
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128771691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGAAGC TGCCACCTTG
  TTTGGTCTCT CTCTCCTGTA GCCTCTTGAG CACTGATAGG AAGACTCATT TGTTTTCATT
  CTAACTTAGG TAAGATTTTG AGTTCTATCT TTCCTACTTT GCTTTGTATT TGCCACCTCA
  CTTATTCCTA TCAACTGCAA AATGGAAGCA AACAATACCA CGATCCCGTC GGATCATTCA
  M
  TAGCACAAGG CCTGTAGTGA GTGCTGTGAA AGTGTTCGCT GTCCTGGAGC CCTGGTGTTG
  GGATTCACAG AGCCTGAGAA CAGCTTCACA GCATCTTGGA TCCAGAGGCT TGGCTGGAGG
  GACCCCAGGC GGAGCCAGCC TTTCTGGACA TGTAGTTTTC CCAGAGGGCC ACTCAGACTG
  CACTAGGTCA GGGAGGGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47058439	NES11260428	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C		C	A	A	C		A
ss323536825	CHEV_10_128372878	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31491119					SNP	A	A	A	A	A	A	A	A	A	C	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058439	NES11260428	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128771691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	1558 bp distal
Gm67752	predicted gene, 67752	within coordinates
Itga7	integrin alpha 7	Intron
Rr441374	regulatory region 441374	1992 bp distal
Rr441375	regulatory region 441375	within coordinates
Rr441376	regulatory region 441376	213 bp distal
Tssr96482	transcription start site region 96482	1994 bp downstream