rs3149211 SNP Detail

Summary

• ID
  rs3149211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118218242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG TCTCATGATC CTAGCGCTGA
  R
  AGGATAAAGT AGGAAGATTA CTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45216263	mCV23158134	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147298132	ENSMUSSNP6483295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320469140	CHEV_2_118213497	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149211					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118218242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	566 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	857 bp upstream
Rr397204	regulatory region 397204	690 bp upstream
Rr563227	regulatory region 563227	367 bp proximal
Rr563228	regulatory region 563228	1362 bp proximal
Tssr19554	transcription start site region 19554	829 bp upstream
Tssr19555	transcription start site region 19555	854 bp upstream
Tssr19556	transcription start site region 19556	890 bp upstream
Tssr19557	transcription start site region 19557	913 bp upstream