rs3149212 SNP Detail

Summary

• ID
  rs3149212
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118218422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTC GGATAATTCT CTTTGTGGGA
  K
  TTGAAAATGC AAGGAGAGAA TTTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37653115	NES09022188	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G	G	G		T		G	G	G		G
ss45304090	mCV23158144	ABI	CRAMUS_MOUSE	f	SNP	G					T		G
ss147298135	ENSMUSSNP6830824	ENSEMBL	ENSEMBL_Sanger	f	SNP	G							G				G
ss320469141	CHEV_2_118213677	CHEVERUD	SCREENING_POP	f	SNP										T						G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3149212					SNP	G	G	G	G	G	T	G	G	G	T	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653115	NES09022188	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118218422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	386 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	677 bp upstream
Rr397204	regulatory region 397204	510 bp upstream
Rr563227	regulatory region 563227	187 bp proximal
Rr563228	regulatory region 563228	1182 bp proximal
Tssr19554	transcription start site region 19554	649 bp upstream
Tssr19555	transcription start site region 19555	674 bp upstream
Tssr19556	transcription start site region 19556	710 bp upstream
Tssr19557	transcription start site region 19557	733 bp upstream