rs3149215 SNP Detail

Summary

• ID
  rs3149215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118219566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC TTCTTATTCC CACTGACGTC
  Y
  CCTAACCACC CTTCGTCCTT CCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147298172	ENSMUSSNP1217712	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320469148	CHEV_2_118214821	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3149215					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118219566 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12078	CpG island 12078			110 bp distal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4			Intron
				mRNA-UTR
Rr397204	regulatory region 397204			333 bp downstream
Rr563227	regulatory region 563227			within coordinates
Rr563228	regulatory region 563228			38 bp proximal
Tssr19554	transcription start site region 19554			479 bp downstream
Tssr19555	transcription start site region 19555			445 bp downstream
Tssr19556	transcription start site region 19556			416 bp downstream
Tssr19557	transcription start site region 19557			402 bp downstream