rs3149221 SNP Detail

Summary

• ID
  rs3149221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118221120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCA ATCATTTAAG ATATAGTTTA
  Y
  AATTCAAGGA CATTTAAAAA ATACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45272876	mCV23158170	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147298241	ENSMUSSNP5678104	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320469160	CHEV_2_118216375	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149221					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118221120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	1664 bp distal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	Intron
Rr397204	regulatory region 397204	1887 bp downstream
Rr563227	regulatory region 563227	1517 bp distal
Rr563228	regulatory region 563228	1168 bp distal
Tssr19555	transcription start site region 19555	1999 bp downstream
Tssr19556	transcription start site region 19556	1970 bp downstream
Tssr19557	transcription start site region 19557	1956 bp downstream