rs31492547 SNP Detail

Summary

• ID
  rs31492547
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCAGCGAAG AGGCGGCGGG GGCAGTAGGG GAGCCGGTCG
  GGCACTCACG GAACTCCGTC GGCCCCCAGA GTCTCCCGAG TCCACCATCC GAGGAGTTCG
  S
  AAACGAGCGC CCCACCTTTG CTATGTTGCC CTTTGGAGAC AAAACGAGGT ACTTCCTTCA
  ACATCCCGCT GGCCACTTTG TCTGGGGAAG GGCTGCGGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45540759	mCV23975496	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss320914171	CHEV_3_122433526	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31492547					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Tssr31509	transcription start site region 31509	1613 bp downstream
Tssr31510	transcription start site region 31510	1593 bp downstream
Tssr31511	transcription start site region 31511	1474 bp downstream
Tssr31512	transcription start site region 31512	1426 bp downstream
Tssr31513	transcription start site region 31513	1375 bp downstream
Tssr31514	transcription start site region 31514	873 bp downstream
Tssr31515	transcription start site region 31515	739 bp downstream
Tssr31516	transcription start site region 31516	714 bp downstream
Tssr31517	transcription start site region 31517	679 bp downstream
Tssr31518	transcription start site region 31518	551 bp downstream
Tssr31519	transcription start site region 31519	489 bp downstream
Tssr31520	transcription start site region 31520	455 bp downstream
Tssr31521	transcription start site region 31521	369 bp downstream
Tssr31522	transcription start site region 31522	347 bp downstream