rs31493004 SNP Detail

Summary

• ID
  rs31493004
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115708309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACTCATC TGCAAGAAAA GATGGTGGAT GGTTCTCTCT
  CTCTCTCTCT CTCTCTCTCA ACTCAGGCCA TCACAACAAC CCTCTCGTTT TTAATTTTTG
  M
  TGTTTTTCAA GGCAGGGTCT CTACGCAGCC CAAGGTGACC TTCAAATTAG GATTCTTCTG
  CCTCAACCGT CAGAGCAACT AGAGTTACAG GTGAGTGCCA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48057761	NES11880541	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31493004					SNP	A	A	C	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057761	NES11880541	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115708309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr637038	regulatory region 637038			292 bp distal
Tmem40	transmembrane protein 40			Intron
				Noncoding-Transcript-Variant
Tssr58323	transcription start site region 58323			614 bp upstream
Tssr62527	transcription start site region 62527			258 bp upstream
Tssr62528	transcription start site region 62528			233 bp upstream