rs31493012 SNP Detail

Summary

• ID
  rs31493012
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115709619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CCCCTTCCTG TTTTATACAC
  K
  ACAGTGCTCT CGCTCCTGAC CAGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48057769	NES11880444	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T		T	G		G
ss321916492	CHEV_6_115682676	CHEVERUD	SCREENING_POP	f	SNP								G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31493012					SNP	T	T	T	T	G	T	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057769	NES11880444	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115709619 () rs orientation: forward

Symbol	Name	Function Class
Rr132360	regulatory region 132360	19 bp distal
Rr147096	regulatory region 147096	within coordinates
Tmem40	transmembrane protein 40	within coordinates
Tssr58323	transcription start site region 58323	682 bp downstream
Tssr62527	transcription start site region 62527	1568 bp upstream
Tssr62528	transcription start site region 62528	1543 bp upstream