rs3149379 SNP Detail

Summary

• ID
  rs3149379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118416109 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACTCG GGTTTGATTC CCATCACCCA
  Y
  ATGGCGGCTT ACAACTGTCT AATTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147305608	ENSMUSSNP4835933	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G
ss320470518	CHEV_2_118411364	CHEVERUD	SCREENING_POP	r	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3149379					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118416109 () rs orientation: reverse

Symbol	Name	Function Class
Rr563272	regulatory region 563272	426 bp proximal