rs3149385 SNP Detail

Summary

• ID
  rs3149385
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118427093 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGAA GCAACTGAGG TGTGTGTCTG
  W
  GGTAGATTCC CACCTCTCTA TTTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45316996	mCV22534336	ABI	CRAMUS_MOUSE	r	SNP	T	A
ss320470598	CHEV_2_118422348	CHEVERUD	SCREENING_POP	r	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs3149385					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118427093 () rs orientation: reverse

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	1599 bp upstream
Cpgi12084	CpG island 12084	1413 bp proximal
Rr397211	regulatory region 397211	1425 bp upstream
Rr563273	regulatory region 563273	1109 bp proximal
Rr563274	regulatory region 563274	1610 bp proximal
Tssr19562	transcription start site region 19562	1597 bp upstream
Tssr19563	transcription start site region 19563	1620 bp upstream
Tssr19564	transcription start site region 19564	1659 bp upstream