rs31493920 SNP Detail

Summary

• ID
  rs31493920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:10290493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTATAAT GCTCTGACTA ATCTCCAGTC TCAATTAATT
  ATTTCTATTC CATTAATTGG ACAGCAGTCA TCTGGAAGAA GCCCTTCCTC AATATACTCC
  Y
  AGATCTGCTA TGGGAAAAGG TCAGCTGCAC CTGTGTCTCC TAGGATCCCC ACTTGCACGG
  ACATGCTCTC CACCAGAAAC ATGTGGCCAC AGCTGCAGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47558181	NES10310644	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31493920					SNP	T	T	T	T	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47558181	NES10310644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:10290493 () rs orientation: forward

Symbol	Name	Function Class
Speer1c	spermatogenesis associated glutamate (E)-rich protein 1C	1220 bp downstream