rs31494574 SNP Detail

Summary

• ID
  rs31494574
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:27836459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGACAGC CTCACTGAGC
  CAGTGACACC TCAGCAGACA TTGTTGGGGA GGGGGCGGGG GTCTTCATGC ACATCTCAGG
  GAAGAACACT TCAGGCCACA TCCCTAGGCT CAGCTGGTGA CAAAGGAAGG AAGGCACCCT
  ATGTGACTAG AGCTGGGGAT TTCAGTAAAG GAGATGAAGG TCTGAAGGAG AGATCACACA
  S
  GAGTCTGACC ACTGTCACCT CTCTGCAGAT CGACTACCAG TACTCAAGCC TGCCGGTCTC
  CCTGAGTGAG GGTCTCTTGC GTGTGCACCA GAGTGGAACA CGAGGTGTGC TAGAACTGGA
  CTTTGGGCTG GTGGTCACCT ATGACTGGGA TGGCCAGCTG ACCCTGAGCC TGCCCAAGCG
  CTTCCAAGAC CAGGTGTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46038168	mCV25404689	ABI	CRAMUS_MOUSE	f	SNP	G	C				C
ss51887447	NES14907462	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C		C	G	C	G	G	G
ss148632146	ENSMUSSNP2284468	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31494574					SNP	G	C	C	C	C	C	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887447	NES14907462	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27836459 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	Intron
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	697 bp proximal
Rr644171	regulatory region 644171	778 bp proximal
Tssr65385	transcription start site region 65385	1976 bp downstream
Tssr65386	transcription start site region 65386	70 bp upstream
Tssr65387	transcription start site region 65387	399 bp upstream
Tssr65388	transcription start site region 65388	496 bp upstream
Tssr65389	transcription start site region 65389	552 bp upstream
Tssr71448	transcription start site region 71448	64 bp downstream
Tssr71449	transcription start site region 71449	74 bp downstream
Tssr71450	transcription start site region 71450	91 bp downstream
Tssr71451	transcription start site region 71451	484 bp downstream