rs31494693 SNP Detail

Summary

• ID
  rs31494693
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128656054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGGAGGT AAACTGTAGT
  CCATAGTCCA TCTGCTCCCA ATGTGTCAAA AGCCGAGCCT TTCCTTGGTC AGGGGTCTCA
  AAGGGCGTCC CTTTGACTGT ATGTAGGAAG ATATACATTG CCTGGGAAGA GGGAAAGGGA
  CAGTATAAGG GGTAGGAAGT AGTCCTTTGG GTCAAGATCC CAAAAGGAAG ACATAAATCC
  M
  CGAACAGCTG GTGACTTTGT TTTGTTTTGG TTGGGATAGA CCTGGGTTGG GTACAGGGTT
  TGGTTTAGTG CTCACCAAGT TATGGATGAC GTTGGTCAGG GTCCAGACAA CAGGAATGCT
  GAAGAAAGGG ATGCTGAGGA GAACCACATG CAGCAGTCCT ACCAAGATGA TGTAGGCCAG
  CCAGATGCCC CGACTGTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47057920	NES11264973	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31494693					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057920	NES11264973	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128656054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	1269 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	737 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	1336 bp upstream
Rr441331	regulatory region 441331	844 bp proximal
Rr441332	regulatory region 441332	1396 bp proximal
Rr441333	regulatory region 441333	1723 bp proximal
Rr441334	regulatory region 441334	1740 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	1579 bp upstream
Tssr96457	transcription start site region 96457	511 bp downstream
Tssr96458	transcription start site region 96458	1541 bp upstream
Tssr96459	transcription start site region 96459	1560 bp upstream
Tssr96460	transcription start site region 96460	1599 bp upstream
Tssr96461	transcription start site region 96461	1702 bp upstream
Tssr99967	transcription start site region 99967	1391 bp downstream