rs31494714 SNP Detail

Summary

• ID
  rs31494714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:33874327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAATAAT TTTTTAATTC AGTCTCCCTA ACCTCTCTCT
  TCTATCCTTA AAAACAATTA AATTTATTTA TCCCTACCCT TTGATTATTT GCTTGTATGA
  R
  CAGGCTGCAT CTACCACCTG ACTCTCTGGC TCTCATTGTC TTCTTCTTCC TAGCAGCCAG
  CCTGACTCTT TGCACAACAT AGCTCCCAGC TTCTCAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46038550	mCV23705547	ABI	CRAMUS_MOUSE	f	SNP		G						G		A
ss48171143	NES11833191	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G		A	G	A	A		G
ss148780066	ENSMUSSNP6253387	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
ss322148790	CHEV_7_34959921	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31494714					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48171143	NES11833191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:33874327 () rs orientation: forward

Symbol	Name	Function Class
Gm12778	predicted gene 12778	810 bp upstream
Gm12783	predicted gene 12783	1856 bp upstream
Rr170512	regulatory region 170512	1327 bp distal
Rr380644	regulatory region 380644	785 bp upstream