rs31494777 SNP Detail

Summary

• ID
  rs31494777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128767838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCCTTT CTGGAGCTCT
  GAGACACAAA CACACTGGAG AGGGAATACT GGGGAACACT GAAGGTAGAA TCCTGTTGCC
  TGTCTTACAT ACCCATCTCT TTTATAGCAC CCGTTTAGAG GCATGCTACA TCCCTGCCGA
  GCATTACAAA AATGGCCAAA CTATCATAGG CATTTTAACT GTCCTGGGGG CAAAGATTGT
  Y
  CTATGATCAG AGTAAGAGCC AAAGAATAAT CCTAAACAGA GAAAAGAGAT AAGGGGACAC
  AGCAGAAGCA GCTTTTAAGA AAGGGAAGAA GAGAGATCAC AAGAATATGG GATATTTGGA
  GGGTAGAGCC ACTGAGAAAT AGTCTGAGAA AGATCTCTAG AGTGACATGC TCAAGGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47058394	NES11260506	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T		T
ss323536794	CHEV_10_128369025	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31494777					SNP	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058394	NES11260506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128767838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	1782 bp proximal
Itga7	integrin alpha 7	1807 bp upstream
Rr441372	regulatory region 441372	1603 bp distal
Rr441373	regulatory region 441373	162 bp distal
Rr441374	regulatory region 441374	1356 bp proximal
Tssr96480	transcription start site region 96480	1782 bp upstream
Tssr96481	transcription start site region 96481	1807 bp upstream
Tssr96482	transcription start site region 96482	1813 bp upstream