rs31494780 SNP Detail

Summary

• ID
  rs31494780
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128767872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGAGGG AATACTGGGG
  AACACTGAAG GTAGAATCCT GTTGCCTGTC TTACATACCC ATCTCTTTTA TAGCACCCGT
  TTAGAGGCAT GCTACATCCC TGCCGAGCAT TACAAAAATG GCCAAACTAT CATAGGCATT
  TTAACTGTCC TGGGGGCAAA GATTGTTCTA TGATCAGAGT AAGAGCCAAA GAATAATCCT
  W
  AACAGAGAAA AGAGATAAGG GGACACAGCA GAAGCAGCTT TTAAGAAAGG GAAGAAGAGA
  GATCACAAGA ATATGGGATA TTTGGAGGGT AGAGCCACTG AGAAATAGTC TGAGAAAGAT
  CTCTAGAGTG ACATGCTCAA GGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA
  AAAATAGAAC TTCAGGCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47058397	NES11260507	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T		T	A	A	T		A
ss323536795	CHEV_10_128369059	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31494780					SNP	A	A	A	A	A	A	A	A	A	T	T	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058397	NES11260507	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128767872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	1748 bp proximal
Itga7	integrin alpha 7	1773 bp upstream
Rr441372	regulatory region 441372	1637 bp distal
Rr441373	regulatory region 441373	196 bp distal
Rr441374	regulatory region 441374	1322 bp proximal
Tssr96480	transcription start site region 96480	1748 bp upstream
Tssr96481	transcription start site region 96481	1773 bp upstream
Tssr96482	transcription start site region 96482	1779 bp upstream