rs31494783 SNP Detail

Summary

• ID
  rs31494783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128767961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACATCC CTGCCGAGCA
  TTACAAAAAT GGCCAAACTA TCATAGGCAT TTTAACTGTC CTGGGGGCAA AGATTGTTCT
  ATGATCAGAG TAAGAGCCAA AGAATAATCC TAAACAGAGA AAAGAGATAA GGGGACACAG
  CAGAAGCAGC TTTTAAGAAA GGGAAGAAGA GAGATCACAA GAATATGGGA TATTTGGAGG
  R
  TAGAGCCACT GAGAAATAGT CTGAGAAAGA TCTCTAGAGT GACATGCTCA AGGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT AAAAATAGAA CTTCAGGCAA AGCAGTCAGA
  GAGGGGTGCA TGCAAGACCA ATGCCTAGTA AGAGAAGCCA GTGGGGCTGT AGAGATGGCT
  CAGAGGTTAA GAGCACTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47058400	NES11260508	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		A	G	G		G
ss323536796	CHEV_10_128369148	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31494783					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058400	NES11260508	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128767961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	1659 bp proximal
Itga7	integrin alpha 7	1684 bp upstream
Rr441372	regulatory region 441372	1726 bp distal
Rr441373	regulatory region 441373	285 bp distal
Rr441374	regulatory region 441374	1233 bp proximal
Tssr96480	transcription start site region 96480	1659 bp upstream
Tssr96481	transcription start site region 96481	1684 bp upstream
Tssr96482	transcription start site region 96482	1690 bp upstream