rs3149481 SNP Detail

Summary

• ID
  rs3149481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118534031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGT ACCGCTCTTT CCAAGCGGCG
  Y
  GTAGGTGGCT GCAACCAAGT GTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45247085	mCV22538197	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147310177	ENSMUSSNP5763835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320471373	CHEV_2_118529286	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149481					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118534031 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12089	CpG island 12089	within coordinates
Rr563305	regulatory region 563305	752 bp distal
Rr563306	regulatory region 563306	65 bp distal
Rr563307	regulatory region 563307	403 bp proximal