rs3149482 SNP Detail

Summary

• ID
  rs3149482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118534165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA GGTGTGGGCT GCTGGCTGCT
  Y
  CGACTCCCGC TCAAGCTCCA AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss37652304	NES09028404	PERLEGEN	MM_PANEL2	f	SNP		C			T		T	C
ss45208605	mCV22538207	ABI	CRAMUS_MOUSE	f	SNP	C		T	C
ss147310183	ENSMUSSNP7078106	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320471374	CHEV_2_118529420	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs3149482					SNP	C	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652304	NES09028404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118534165 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12089	CpG island 12089	within coordinates
Rr563305	regulatory region 563305	886 bp distal
Rr563306	regulatory region 563306	199 bp distal
Rr563307	regulatory region 563307	269 bp proximal