rs3149484 SNP Detail

Summary

• ID
  rs3149484
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118535384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA AAACCTACTT CCTTTGGACA
  W
  TCAGCTCATG GGCGCTAGAG ACGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37652303	NES09028405	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	A	A	T	A		A		A	T
ss147310187	ENSMUSSNP1667729	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T				A
ss320471376	CHEV_2_118530639	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
rs3149484					SNP	T	T	T	T	T	A	A	T	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652303	NES09028405	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118535384 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	940 bp upstream
Cpgi12089	CpG island 12089	207 bp distal
Rr563306	regulatory region 563306	1418 bp distal
Rr563307	regulatory region 563307	450 bp distal
Rr563308	regulatory region 563308	1564 bp proximal
Rr563309	regulatory region 563309	1653 bp proximal