rs3149485 SNP Detail

Summary

• ID
  rs3149485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118535863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG CCATTGGATG GAAGGACAAA
  Y
  GATGGGAAGG AGAGGGAACT AAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147310198	ENSMUSSNP464455	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320471378	CHEV_2_118531118	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3149485					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118535863 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	1419 bp upstream
Cpgi12089	CpG island 12089	686 bp distal
Rr563306	regulatory region 563306	1897 bp distal
Rr563307	regulatory region 563307	929 bp distal
Rr563308	regulatory region 563308	1085 bp proximal
Rr563309	regulatory region 563309	1174 bp proximal