rs3149486 SNP Detail

Summary

• ID
  rs3149486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118536220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG GAGTGGATTC GGGCTAGACC
  M
  TACAACAGGG ACTCATGCTC CCCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37652302	NES09028344	PERLEGEN	MM_PANEL2	f	SNP			C	C			A		A
ss45241784	mCV22538480	ABI	CRAMUS_MOUSE	f	SNP					A	C
ss147310202	ENSMUSSNP2912672	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss320471379	CHEV_2_118531475	CHEVERUD	SCREENING_POP	f	SNP								A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs3149486					SNP	C	C	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652302	NES09028344	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118536220 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	1776 bp upstream
Cpgi12089	CpG island 12089	1043 bp distal
Plcb2	phospholipase C, beta 2	1778 bp downstream
Rr563307	regulatory region 563307	1286 bp distal
Rr563308	regulatory region 563308	728 bp proximal
Rr563309	regulatory region 563309	817 bp proximal