rs3149487 SNP Detail

Summary

• ID
  rs3149487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118536311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC CCCCACGCAT TTCTTGGCAG
  R
  AGAGTTAGGT CTCAGCCTGT GTCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45273740	mCV22538481	ABI	CRAMUS_MOUSE	f	SNP			G	A
ss147310208	ENSMUSSNP768760	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320471380	CHEV_2_118531566	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149487					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118536311 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	1867 bp upstream
Cpgi12089	CpG island 12089	1134 bp distal
Plcb2	phospholipase C, beta 2	1687 bp downstream
Rr563307	regulatory region 563307	1377 bp distal
Rr563308	regulatory region 563308	637 bp proximal
Rr563309	regulatory region 563309	726 bp proximal