rs3149488 SNP Detail

Summary

• ID
  rs3149488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118536344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT CAGCCTGTGT CATACACTGG
  Y
  AGTGTCAACC CAGGCCTGCA CAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45210337	mCV22538482	ABI	CRAMUS_MOUSE	f	SNP			C	T
ss147310213	ENSMUSSNP2528483	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320471381	CHEV_2_118531599	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149488					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118536344 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	1900 bp upstream
Cpgi12089	CpG island 12089	1167 bp distal
Plcb2	phospholipase C, beta 2	mRNA-UTR
Rr563307	regulatory region 563307	1410 bp distal
Rr563308	regulatory region 563308	604 bp proximal
Rr563309	regulatory region 563309	693 bp proximal