rs31494886 SNP Detail

Summary

• ID
  rs31494886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36394239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTCTTA AAGAATCGAA
  AGGCCTCTGG GAGGGACAGA CTCATGGGGA CACCTGTGCT TGTGTGTTTA CCATCTGAGT
  AGATCCAGAA GGAGCAGAAA CCAAAGAAGT ACAATAGGAA GAACTCGAAA ATGCAGCCTC
  GGCAGCCAGG AATTATCTGC AAGCTCTGAT TTCTCAAACA TATGGCTCTG CCCTTTTTTT
  Y
  CCCCCTGTAA TGACATGTGA ACTTCAGAGT TACTACTACC AGACGCCATT TCTTCCTATA
  CAGAGCCCTT CATTTTCACG GAGAGTCCAT CAGTTGGCAT TTCTCCATGT CAGGCCCTGG
  AAACAGCGGT CAGCCCGGCT ATACAAAGTT TTTATTGTTG AAATCTTGTT AGATGCAGAG
  GGGCAAACCC CACAACCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46038797	mCV25433256	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31494886					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36394239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	296 bp distal
Cpgi18884	CpG island 18884	363 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	624 bp upstream
Gm72509	predicted gene, 72509	1828 bp upstream
Rr645552	regulatory region 645552	1962 bp distal
Rr645553	regulatory region 645553	852 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	1098 bp proximal
Tssr65916	transcription start site region 65916	1812 bp upstream
Tssr72063	transcription start site region 72063	1256 bp downstream