rs3149490 SNP Detail

Summary

• ID
  rs3149490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118537058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG CTGACAGGAG AAGGAGCTAT
  R
  CAGGCAGGGG GCAGGCAGGC GCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45237759	mCV22538492	ABI	CRAMUS_MOUSE	f	SNP	G		G	A	G
ss147310232	ENSMUSSNP4885880	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320471386	CHEV_2_118532313	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149490					SNP	G	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118537058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12089	CpG island 12089	1881 bp distal
Plcb2	phospholipase C, beta 2	mRNA-UTR
Rr563308	regulatory region 563308	within coordinates
Rr563309	regulatory region 563309	within coordinates