rs31495095 SNP Detail

Summary

• ID
  rs31495095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19305479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGGCT CAAGAGTTTC
  ACATTTTAGG CTAGCCTGAG CCATGAGGCT CTAATTAAAG AAGATTTAAT CATACCTAGA
  AGCCCCATTT GCTGGAATGG ACCTGAGGCT AGATCTCACT TTGCTGGGTC CAGGCTGGCA
  GGTGTCAGAA AAAGGCAGCT AACTGTGAGC ATTGGAGCAG GTGTTTTCTC CTGGTCTTTC
  Y
  TGCTAACACA ATTGGGCCCT GGACTGTCTG GAGACAAGAT GGGAAGATTT AAGAAAACAA
  AAACTGATAT ATGCTGGGTT TGGTGATGCA TGCCCTTAAG CCCAGTGCTT GGGAGACAGA
  GACAGGTGGG GTCTCTTGCG TTTAAAGCCA GCCTAGTCTA CAGAGTGAGT TCTAGGACAG
  CCAAGGCTAC ATACAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46038659	mCV25052796	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss48163400	NES11822166	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T		C	C	C	C	T	T	T	T	C
ss148479026	ENSMUSSNP7004292	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31495095					SNP	T	T	C	C	C	T	T	C	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163400	NES11822166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19305479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	1429 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	678 bp upstream
Rr643192	regulatory region 643192	486 bp distal
Rr643193	regulatory region 643193	982 bp proximal
Rr643194	regulatory region 643194	1404 bp proximal
Tssr70933	transcription start site region 70933	1803 bp downstream
Tssr70934	transcription start site region 70934	1818 bp downstream
Tssr70935	transcription start site region 70935	1825 bp downstream