rs31495216 SNP Detail

Summary

• ID
  rs31495216
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128768672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAGGGA AGTGAAGTTG
  GGTAGGCCCT TGGGTCTCTG TGGAGAACTC TTTATTTTAT TTTTTTGAGG CAGGGTCTGG
  GTATTGGAGA TCATCCAACT CCTATCTGAA GTAGCCCAAA ACTCTGCATT CCCCTTTCTG
  TTGATTCATT CAGAGACCAA TTCACTATGT AGCTTTGTAG GCTGGGCTGA CTTCAGCCTT
  K
  TTCACTGCTG AGATTGCAGG TCTGGGTCTT CAAGCCTGGC TTCCCATCCC CCTCTTAGGT
  TTTGAGACAG GGCTGCACTC TGTAGCTCTG ACTGGCCTGG AACTCTCCCT GTAGACCAAG
  TTGCTTTCGA GATGACAGAG ATCTTCCTGG CTCTGCCTAT TGAGTGCTGG GAATATAAGC
  GCGTCCTACC ACACCCAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47058403	NES11260475	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T		T	G	G	T		G
ss323536799	CHEV_10_128369859	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31495216					SNP	G	G	G	G	G	G	T	G	G	T	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058403	NES11260475	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128768672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	948 bp proximal
Itga7	integrin alpha 7	973 bp upstream
Rr441373	regulatory region 441373	996 bp distal
Rr441374	regulatory region 441374	522 bp proximal
Tssr96480	transcription start site region 96480	948 bp upstream
Tssr96481	transcription start site region 96481	973 bp upstream
Tssr96482	transcription start site region 96482	979 bp upstream