rs31495376 SNP Detail

Summary

• ID
  rs31495376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128656947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTTTAC TCAGATCTTT
  ACATTTCAAC TAAATATAAA GCAGTAAGTT TAGACTGTGA GACCTATTTG AAGGATCGGA
  GGAATCGGGA GTATTTTAAT TTACTTTCTT GAGGAAGTTA GTGAATTATA AAGAGGTCAC
  ACATACCCAG AGTTCCACAA GAAAGCTATT CAGTTAATCA AGGGACCAAT AAAGAAGGCA
  M
  TGAGAGTAAA GCTACCTCTA GTTCCCATCC TTTTTTCCTG GGGCTTGTCC ATCCTGTCTC
  TCACCCGCTT GGCATTGTCA GCAGCCAAGC AATTTCATCC CTTCACTGAA CGTGGGGCGC
  TGCAAAAACT TACCCAATTT TTAAATTAGT CTAGGAAGGG GTCTGAGCTC AGTCCCTCAA
  GAAATGGGAG TCCTTCCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47057923	NES11264951	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A		C	C	C	A		C
ss323536208	CHEV_10_128258134	CHEVERUD	SCREENING_POP	f	SNP									C					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31495376					SNP	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057923	NES11264951	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128656947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	376 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	1630 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	443 bp upstream
Rr441331	regulatory region 441331	within coordinates
Rr441332	regulatory region 441332	503 bp proximal
Rr441333	regulatory region 441333	830 bp proximal
Rr441334	regulatory region 441334	847 bp proximal
Rr441335	regulatory region 441335	1165 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	686 bp upstream
Tssr96457	transcription start site region 96457	1404 bp downstream
Tssr96458	transcription start site region 96458	648 bp upstream
Tssr96459	transcription start site region 96459	667 bp upstream
Tssr96460	transcription start site region 96460	706 bp upstream
Tssr96461	transcription start site region 96461	809 bp upstream
Tssr99967	transcription start site region 99967	498 bp downstream