rs31495668 SNP Detail

Summary

• ID
  rs31495668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTCTTTC TGGTCCTCTG
  AATGCTGACG TTGTGACTTG CTAATACTGC CTTCGTTATT TGTGGGCTGT ATGGCATGAG
  GAGCGGTTTG ATTCTTACAG CCTACGAGGT GTGCTGTGAG TCTCCAGGGG AGGCGAAGTC
  AGTAAAGGAC CACTCTAGAT CAGGGCCCAG GAACTTTCCG GTCCTCTGTT TTTATCAGCA
  Y
  ATCTGTCTTC TCAGCCTCAT CTCAATTCTC TGTGATTCTT CTTTTTACTG TACTCTTTCT
  CTCCGCATTT CTGGGCTCAA CCTCCACTTT TTGGGGGGAA GGGTGGGTGA AGGAATGAGT
  GCACAGTGCA AAGGTGGGGC GGCAGGGCGC AAGGCAATGG GTGCGGCGGG TGCTAGACCT
  GAGCCGCGGG TCTGGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47058415	NES11260420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss323536808	CHEV_10_128370532	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31495668					SNP	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058415	NES11260420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	275 bp proximal
Itga7	integrin alpha 7	300 bp upstream
Rr441373	regulatory region 441373	1669 bp distal
Rr441374	regulatory region 441374	within coordinates
Rr441375	regulatory region 441375	1842 bp proximal
Tssr96480	transcription start site region 96480	275 bp upstream
Tssr96481	transcription start site region 96481	300 bp upstream
Tssr96482	transcription start site region 96482	306 bp upstream