rs31495671 SNP Detail

Summary

• ID
  rs31495671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGTCCTC TGTTTTTATC
  AGCATATCTG TCTTCTCAGC CTCATCTCAA TTCTCTGTGA TTCTTCTTTT TACTGTACTC
  TTTCTCTCCG CATTTCTGGG CTCAACCTCC ACTTTTTGGG GGGAAGGGTG GGTGAAGGAA
  TGAGTGCACA GTGCAAAGGT GGGGCGGCAG GGCGCAAGGC AATGGGTGCG GCGGGTGCTA
  R
  ACCTGAGCCG CGGGTCTGGG CATCCCCGGA CCCTGGGTCT TGCGCCTGAG TCTATCTGCT
  GCTGGGGGCA TGGGGCGGGA AGGGGCGGGG TCTGGGGCGG TGTCCCAGAG AGGAGGCGGA
  GCCGGAGCCG GAGCCGGTGC TCCCAAGGCG TGCAGTAGTT GTACTTAGCT GGTCCTGGGG
  CAGCAGCGGG AAGGGACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47058418	NES11260421	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31495671					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058418	NES11260421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	99 bp proximal
Itga7	integrin alpha 7	124 bp upstream
Rr441373	regulatory region 441373	1845 bp distal
Rr441374	regulatory region 441374	within coordinates
Rr441375	regulatory region 441375	1666 bp proximal
Rr441376	regulatory region 441376	1936 bp proximal
Tssr96480	transcription start site region 96480	99 bp upstream
Tssr96481	transcription start site region 96481	124 bp upstream
Tssr96482	transcription start site region 96482	130 bp upstream