rs3149572 SNP Detail

Summary

• ID
  rs3149572
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118574835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CGAAAAACCA AACCAACCAA
  M
  CAAACAAACA AAAAACAAAC AAACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147311564	ENSMUSSNP6394798	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320471579	CHEV_2_118570090	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3149572					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118574835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12091	CpG island 12091	730 bp proximal
Inafm2	InaF motif containing 2	1404 bp upstream
Rr397215	regulatory region 397215	1053 bp upstream
Rr563315	regulatory region 563315	513 bp distal
Rr563316	regulatory region 563316	914 bp proximal
Rr563317	regulatory region 563317	1145 bp proximal
Rr563318	regulatory region 563318	1980 bp proximal
Tssr19569	transcription start site region 19569	1384 bp upstream
Tssr19570	transcription start site region 19570	1423 bp upstream