rs3149573 SNP Detail

Summary

• ID
  rs3149573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118575767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG ACTGCGGTGT GCGGGCGCCA
  R
  GTTCCCAGAC CCGAACCAGG CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45340841	mCV22540234	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147311579	ENSMUSSNP1898859	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs3149573					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118575767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12091	CpG island 12091	within coordinates
Inafm2	InaF motif containing 2	472 bp upstream
Rr397215	regulatory region 397215	121 bp upstream
Rr563315	regulatory region 563315	1445 bp distal
Rr563316	regulatory region 563316	within coordinates
Rr563317	regulatory region 563317	213 bp proximal
Rr563318	regulatory region 563318	1048 bp proximal
Tssr19569	transcription start site region 19569	452 bp upstream
Tssr19570	transcription start site region 19570	491 bp upstream
Tssr19571	transcription start site region 19571	1699 bp upstream
Tssr19572	transcription start site region 19572	1977 bp upstream