rs31496054 SNP Detail

Summary

• ID
  rs31496054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTATCA GCATATCTGT
  CTTCTCAGCC TCATCTCAAT TCTCTGTGAT TCTTCTTTTT ACTGTACTCT TTCTCTCCGC
  ATTTCTGGGC TCAACCTCCA CTTTTTGGGG GGAAGGGTGG GTGAAGGAAT GAGTGCACAG
  TGCAAAGGTG GGGCGGCAGG GCGCAAGGCA ATGGGTGCGG CGGGTGCTAG ACCTGAGCCG
  Y
  GGGTCTGGGC ATCCCCGGAC CCTGGGTCTT GCGCCTGAGT CTATCTGCTG CTGGGGGCAT
  GGGGCGGGAA GGGGCGGGGT CTGGGGCGGT GTCCCAGAGA GGAGGCGGAG CCGGAGCCGG
  AGCCGGTGCT CCCAAGGCGT GCAGTAGTTG TACTTAGCTG GTCCTGGGGC AGCAGCGGGA
  AGGGACTGAA GAGGGGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47058421	NES11260422	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31496054					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058421	NES11260422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	88 bp proximal
Itga7	integrin alpha 7	113 bp upstream
Rr441373	regulatory region 441373	1856 bp distal
Rr441374	regulatory region 441374	within coordinates
Rr441375	regulatory region 441375	1655 bp proximal
Rr441376	regulatory region 441376	1925 bp proximal
Tssr96480	transcription start site region 96480	88 bp upstream
Tssr96481	transcription start site region 96481	113 bp upstream
Tssr96482	transcription start site region 96482	119 bp upstream