rs3149607 SNP Detail

Summary

• ID
  rs3149607
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118591888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT CCTCGATCTC CTGTGGGAGG
  K
  CCTGAAGTCA GCAAGGCCAT GGCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652175	NES09027476	PERLEGEN	MM_PANEL2	f	SNP	T			T	T			G		G	T	G		T
ss45371652	mCV22541268	ABI	CRAMUS_MOUSE	f	SNP		T	T			G	T
ss147311939	ENSMUSSNP5788821	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				T
ss320471645	CHEV_2_118587143	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3149607					SNP	T	T	T	T	T	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652175	NES09027476	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118591888 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			Intron
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			1197 bp upstream
Rr563322	regulatory region 563322			1354 bp distal
Rr563323	regulatory region 563323			23 bp distal
Rr563324	regulatory region 563324			78 bp proximal
Rr563325	regulatory region 563325			967 bp proximal
Rr563326	regulatory region 563326			1244 bp proximal
Tssr25793	transcription start site region 25793			1200 bp downstream