rs3149609 SNP Detail

Summary

• ID
  rs3149609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118592782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC TCTGGGCCGA GCCATGCCTC
  Y
  GCATCAAGAT CTGCGGTTCT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45316156	mCV22541291	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147311979	ENSMUSSNP5731426	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320471652	CHEV_2_118588037	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3149609					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118592782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			303 bp upstream
Rr563323	regulatory region 563323			917 bp distal
Rr563324	regulatory region 563324			795 bp distal
Rr563325	regulatory region 563325			73 bp proximal
Rr563326	regulatory region 563326			350 bp proximal
Rr563327	regulatory region 563327			1889 bp proximal
Tssr25793	transcription start site region 25793			306 bp downstream