rs3149612 SNP Detail

Summary

• ID
  rs3149612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118593573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA GACCCAAAAT GCCACTCTCC
  M
  CCATTTGGTT TCTGAGCTGG AATGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45336833	mCV22541303	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147311995	ENSMUSSNP6781952	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320471655	CHEV_2_118588828	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149612					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118593573 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	431 bp upstream
Rr367276	regulatory region 367276	305 bp downstream
Rr397216	regulatory region 397216	1516 bp upstream
Rr563323	regulatory region 563323	1708 bp distal
Rr563324	regulatory region 563324	1586 bp distal
Rr563325	regulatory region 563325	697 bp distal
Rr563326	regulatory region 563326	within coordinates
Rr563327	regulatory region 563327	1098 bp proximal
Rr563328	regulatory region 563328	1583 bp proximal
Tssr25793	transcription start site region 25793	426 bp upstream