rs3149613 SNP Detail

Summary

• ID
  rs3149613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118593574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG ACCCAAAATG CCACTCTCCC
  Y
  CATTTGGTTT CTGAGCTGGA ATGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45342552	mCV22541304	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147311999	ENSMUSSNP1477843	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320471656	CHEV_2_118588829	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149613					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118593574 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	432 bp upstream
Rr367276	regulatory region 367276	306 bp downstream
Rr397216	regulatory region 397216	1515 bp upstream
Rr563323	regulatory region 563323	1709 bp distal
Rr563324	regulatory region 563324	1587 bp distal
Rr563325	regulatory region 563325	698 bp distal
Rr563326	regulatory region 563326	within coordinates
Rr563327	regulatory region 563327	1097 bp proximal
Rr563328	regulatory region 563328	1582 bp proximal
Tssr25793	transcription start site region 25793	427 bp upstream