rs3149614 SNP Detail

Summary

• ID
  rs3149614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118593854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA GTAAGTATCT TCACACAGCC
  R
  AGGCCAGTCT CTGCCCAGGG GTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652169	NES09027482	PERLEGEN	MM_PANEL2	f	SNP	A			A	A			G		G	A	G		A
ss45357721	mCV22541305	ABI	CRAMUS_MOUSE	f	SNP		A	A			G	A
ss147312004	ENSMUSSNP3762823	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				A
ss320471657	CHEV_2_118589109	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3149614					SNP	A	A	A	A	A	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652169	NES09027482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118593854 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	712 bp upstream
Rr367276	regulatory region 367276	586 bp downstream
Rr397216	regulatory region 397216	1235 bp upstream
Rr563323	regulatory region 563323	1989 bp distal
Rr563324	regulatory region 563324	1867 bp distal
Rr563325	regulatory region 563325	978 bp distal
Rr563326	regulatory region 563326	222 bp distal
Rr563327	regulatory region 563327	817 bp proximal
Rr563328	regulatory region 563328	1302 bp proximal
Rr563329	regulatory region 563329	1933 bp proximal
Tssr25793	transcription start site region 25793	707 bp upstream