rs3149616 SNP Detail

Summary

• ID
  rs3149616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118594728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TACCATGTAC CCTGAACAGC
  Y
  CCAAAGACAA GACTGAAGCT CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5046763	WI_WGS_2_119711576	WI	MOUSE	f	SNP	C			T
ss45232369	mCV22541317	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147312024	ENSMUSSNP1331233	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320471660	CHEV_2_118589983	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149616					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118594728 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	1586 bp upstream
Rr367276	regulatory region 367276	1460 bp downstream
Rr397216	regulatory region 397216	361 bp upstream
Rr563325	regulatory region 563325	1852 bp distal
Rr563326	regulatory region 563326	1096 bp distal
Rr563327	regulatory region 563327	within coordinates
Rr563328	regulatory region 563328	428 bp proximal
Rr563329	regulatory region 563329	1059 bp proximal
Tssr25793	transcription start site region 25793	1581 bp upstream