rs3149617 SNP Detail

Summary

• ID
  rs3149617
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118594779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCG GCCACGTGTT TCCAAGTGTC
  W
  CTCACAGCTT CTCACGCCCT TGAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss5047282	WI_WGS_2_119711627	WI	MOUSE	f	SNP	T					A
ss37652168	NES09027446	PERLEGEN	MM_PANEL2	f	SNP	T			T	T			A	A	T	A	T
ss45268147	mCV22541328	ABI	CRAMUS_MOUSE	f	SNP		T	A			A	A
ss147312029	ENSMUSSNP5686796	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs3149617					SNP	T	T	A	T	T	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652168	NES09027446	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118594779 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	1637 bp upstream
Rr367276	regulatory region 367276	1511 bp downstream
Rr397216	regulatory region 397216	310 bp upstream
Rr563325	regulatory region 563325	1903 bp distal
Rr563326	regulatory region 563326	1147 bp distal
Rr563327	regulatory region 563327	within coordinates
Rr563328	regulatory region 563328	377 bp proximal
Rr563329	regulatory region 563329	1008 bp proximal
Tssr25793	transcription start site region 25793	1632 bp upstream