rs3149619 SNP Detail

Summary

• ID
  rs3149619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118595474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG TTTGCTTGCG ATGTCTCTCT
  R
  TGCTCTCTCT TTCTCCTACT AGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652166	NES09027448	PERLEGEN	MM_PANEL2	f	SNP	G			G	G			A	G	A		G
ss147312059	ENSMUSSNP4507298	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss320471666	CHEV_2_118590729	CHEVERUD	SCREENING_POP	f	SNP							A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3149619					SNP	G	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652166	NES09027448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118595474 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	84 bp downstream
Rr563326	regulatory region 563326	1842 bp distal
Rr563327	regulatory region 563327	57 bp distal
Rr563328	regulatory region 563328	297 bp distal
Rr563329	regulatory region 563329	313 bp proximal
Rr563330	regulatory region 563330	1498 bp proximal
Rr563331	regulatory region 563331	1838 bp proximal