rs3149620 SNP Detail

Summary

• ID
  rs3149620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118596317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC CAGGCCCCAG GCCATTCTCT
  Y
  GACCCCAGCA CTAGGTGCTT CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652165	NES09027449	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	T	C		C	C		T
ss147312074	ENSMUSSNP4192041	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss320471668	CHEV_2_118591572	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs3149620					SNP	T	T	T	T	T	T	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652165	NES09027449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118596317 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	927 bp downstream
Rr563327	regulatory region 563327	900 bp distal
Rr563328	regulatory region 563328	1140 bp distal
Rr563329	regulatory region 563329	170 bp distal
Rr563330	regulatory region 563330	655 bp proximal
Rr563331	regulatory region 563331	995 bp proximal