rs31496368 SNP Detail

Summary

• ID
  rs31496368
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115639022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGGTAC ATGGCTCATA
  TTAGAGACTG AAAGAATGCC TTCTTTCAGT CCAGCAAGGC TATTCTACAC TACCTGCAGA
  GAAGAGCCTC CCTGAAGCAC GCACAGCCTT TCTTATGGGT GCTTTTGAAT AGGTCCTCTC
  CTAAAAAGTC AAAGCAAATT CCTTTTCATT GTAGTAAAAA TAACTAATGC TAATGACCCT
  S
  ACTAATTCCA GAGGCTTTTC CAGAATTAAA TCTATAAGAA CCAAAAGTTT AAATTTTTCT
  GCTGAAAAGA GTCCAAGGCA GGCCTAGTGT ACATACCTCT AAACCCAGCA ATCAAGAAGC
  AGAAGCAGAG CCGGGCGTGG TGGTGTAAGC CTTTAATCCC AGCAGTCAGG AGGCAGAGGC
  AGGGGCAGGC GGATTTCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057315	NES11882146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31496368					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057315	NES11882146	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115639022 () rs orientation: forward

Symbol	Name	Function Class
Raf1	v-raf-leukemia viral oncogene 1	Intron
Rr637013	regulatory region 637013	1991 bp proximal
Tssr62521	transcription start site region 62521	312 bp upstream