rs3149656 SNP Detail

Summary

• ID
  rs3149656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118622101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC ACCTGGAATG TCCCCCTCAG
  Y
  CTGTTCTCTG TGGCAGCTGT GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45354162	mCV22542676	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147313115	ENSMUSSNP3591268	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320471839	CHEV_2_118617356	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149656					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118622101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12093	CpG island 12093			587 bp distal
Disp2	dispatched RND transporter family member 2			Coding-Synonymous
				Intron
Rr563341	regulatory region 563341			961 bp distal
Rr563342	regulatory region 563342			810 bp distal