rs3149725 SNP Detail

Summary

• ID
  rs3149725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118492537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG TCCCTCTTGT TGGACACTGA
  Y
  GTTGTCCCTG TGTGCAGTCT GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652445	NES09029047	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	T		C	C		C
ss45329725	mCV22536051	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss147308841	ENSMUSSNP6475922	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320471118	CHEV_2_118487792	CHEVERUD	SCREENING_POP	f	SNP													T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs3149725					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652445	NES09029047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118492537 () rs orientation: forward

Symbol	Name	Function Class
1700008N17Rik	RIKEN cDNA 1700008N17 gene	1986 bp upstream
Cpgi12085	CpG island 12085	1164 bp proximal
Gm75659	predicted gene, 75659	within coordinates
Pak6	p21 (RAC1) activated kinase 6	1247 bp upstream
Rr55422	regulatory region 55422	1536 bp distal
Rr55423	regulatory region 55423	663 bp proximal
Rr373743	regulatory region 373743	1412 bp downstream
Tssr19565	transcription start site region 19565	1179 bp upstream
Tssr19566	transcription start site region 19566	1255 bp upstream
Tssr19567	transcription start site region 19567	1666 bp upstream