rs3149727 SNP Detail

Summary

• ID
  rs3149727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118492753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA ATCCTGGGAG GCAGGTGAAA
  Y
  TGTTTCCATT TTATAGATGA TGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45253267	mCV22536063	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147308856	ENSMUSSNP5467979	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320471121	CHEV_2_118488008	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149727					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118492753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	948 bp proximal
Gm75659	predicted gene, 75659	within coordinates
Pak6	p21 (RAC1) activated kinase 6	1031 bp upstream
Rr55422	regulatory region 55422	1752 bp distal
Rr55423	regulatory region 55423	447 bp proximal
Rr373743	regulatory region 373743	1628 bp downstream
Tssr19565	transcription start site region 19565	963 bp upstream
Tssr19566	transcription start site region 19566	1039 bp upstream
Tssr19567	transcription start site region 19567	1450 bp upstream