rs3149728 SNP Detail

Summary

• ID
  rs3149728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118493213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA AGGAGGCAGG AGGCTCAAGA
  Y
  AGTGAGGGAG GGGCCATGCT TACGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45353812	mCV22536064	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147308860	ENSMUSSNP3635635	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320471122	CHEV_2_118488468	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149728					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118493213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	488 bp proximal
Gm75659	predicted gene, 75659	within coordinates
Pak6	p21 (RAC1) activated kinase 6	571 bp upstream
Rr55423	regulatory region 55423	within coordinates
Tssr19565	transcription start site region 19565	503 bp upstream
Tssr19566	transcription start site region 19566	579 bp upstream
Tssr19567	transcription start site region 19567	990 bp upstream